SRX243768
GSM1086301: Namalwa 1 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
NAMALWA
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Burkitt lymphoma cell line
cell line
Namalwa
treatment
none
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41590990
Reads aligned (%)
88.3
Duplicates removed (%)
5.0
Number of peaks
1029 (qval < 1E-05)

hg19

Number of total reads
41590990
Reads aligned (%)
87.6
Duplicates removed (%)
6.0
Number of peaks
1163 (qval < 1E-05)

Base call quality data from DBCLS SRA