SRX243766
GSM1086299: Raji 1 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Burkitt lymphoma cell line
cell line
Raji
treatment
none
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41645552
Reads aligned (%)
90.6
Duplicates removed (%)
22.8
Number of peaks
631 (qval < 1E-05)

hg19

Number of total reads
41645552
Reads aligned (%)
89.8
Duplicates removed (%)
23.8
Number of peaks
986 (qval < 1E-05)

Base call quality data from DBCLS SRA