Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX5

Cell type

Cell type Class
Blood
Cell type
L-428
Primary Tissue
Blood
Tissue Diagnosis
Hodgkin's Lymphoma

Attributes by original data submitter

Sample

source_name
Hodgkin lymphoma cell line
cell line
L428-PAX5
treatment
Mifepristone
chip antibody
Pax-5 antibody (C-20)
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
52221397
Reads aligned (%)
57.1
Duplicates removed (%)
32.8
Number of peaks
7419 (qval < 1E-05)

hg38

Number of total reads
52221397
Reads aligned (%)
58.4
Duplicates removed (%)
31.8
Number of peaks
7443 (qval < 1E-05)

Base call quality data from DBCLS SRA