SRX243763
GSM1086296: Namalwa 2 IP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX5

Cell type

Cell type Class
Blood
Cell type
NAMALWA
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Burkitt lymphoma cell line
cell line
Namalwa
treatment
none
chip antibody
Pax-5 antibody (C-20)
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
54931298
Reads aligned (%)
83.1
Duplicates removed (%)
60.7
Number of peaks
2691 (qval < 1E-05)

hg19

Number of total reads
54931298
Reads aligned (%)
82.2
Duplicates removed (%)
62.4
Number of peaks
2870 (qval < 1E-05)

Base call quality data from DBCLS SRA