Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PAX5

Cell type

Cell type Class
Blood
Cell type
NAMALWA
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
Burkitt lymphoma cell line
cell line
Namalwa
treatment
none
chip antibody
Pax-5 antibody (C-20)
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
37901879
Reads aligned (%)
59.0
Duplicates removed (%)
27.2
Number of peaks
9708 (qval < 1E-05)

hg38

Number of total reads
37901879
Reads aligned (%)
60.3
Duplicates removed (%)
26.2
Number of peaks
9417 (qval < 1E-05)

Base call quality data from DBCLS SRA