SRX243628
GSM1084784: SNU216 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
SNU-216
Primary Tissue
Stomach
Site of Extraction
Lymph Node
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
SNU216
cell line
SNU216
cell type
gastric cancer cell
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30806723
Reads aligned (%)
85.8
Duplicates removed (%)
7.9
Number of peaks
1426 (qval < 1E-05)

hg19

Number of total reads
30806723
Reads aligned (%)
84.5
Duplicates removed (%)
9.8
Number of peaks
1251 (qval < 1E-05)

Base call quality data from DBCLS SRA