SRX243627
GSM1084783: MKN28 TEAD4 ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TEAD4

Cell type

Cell type Class
Digestive tract
Cell type
MKN-28
Primary Tissue
Stomach
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MKN28
cell line
MKN28
cell type
gastric cancer cell
chip antibody
TEAD4 (Abnova, H00007004-M01, 11105-5H3)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
29631960
Reads aligned (%)
66.0
Duplicates removed (%)
34.9
Number of peaks
3600 (qval < 1E-05)

hg38

Number of total reads
29631960
Reads aligned (%)
66.5
Duplicates removed (%)
33.2
Number of peaks
3659 (qval < 1E-05)

Base call quality data from DBCLS SRA