Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
D341 Med
Primary Tissue
Brain: Cerebellum
Tissue Diagnosis
Medulloblastoma

Attributes by original data submitter

Sample

source_name
H3K4m3 ChIP-seq in D341 cell line
cell line
D341
chip antibody
H3K4m3
source type
cell line

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
8909174
Reads aligned (%)
99.7
Duplicates removed (%)
16.2
Number of peaks
24814 (qval < 1E-05)

hg19

Number of total reads
8909174
Reads aligned (%)
99.5
Duplicates removed (%)
16.3
Number of peaks
24814 (qval < 1E-05)

Base call quality data from DBCLS SRA