Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Input control for ChIP with Ctrl KD
chip antibody
none
cell type
Human Cervical Carcinoma cells
cell line
HeLa
genotype/variation
control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was recovered after reverse crosslinking and phenol chloroform extraction. After precipitating and pelleting, DNA was dissolved in 30 μl of TE. NebNext Ultra II according to manufacturer's protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
62379334
Reads aligned (%)
98.5
Duplicates removed (%)
3.0
Number of peaks
1886 (qval < 1E-05)

hg19

Number of total reads
62379334
Reads aligned (%)
97.7
Duplicates removed (%)
4.4
Number of peaks
1352 (qval < 1E-05)

Base call quality data from DBCLS SRA