Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RFX1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
adult
donor ID
ENCDO000AAD
age
53 year
sex
female
lab
Michael Snyder, Stanford
health state
chronic myelogenous leukemia (CML)
sample type
immortalized cell line
cell line
K562

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
57912488
Reads aligned (%)
96.9
Duplicates removed (%)
29.1
Number of peaks
18635 (qval < 1E-05)

hg19

Number of total reads
57912488
Reads aligned (%)
96.2
Duplicates removed (%)
29.4
Number of peaks
17947 (qval < 1E-05)

Base call quality data from DBCLS SRA