Antigen

Antigen Class

TFs and others

Antigen

HDAC8

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

dev stage

adult

donor ID

ENCDO000AAD

age

53 year

sex

female

passage number

5

lab

Kevin White, UChicago

health state

chronic myelogenous leukemia (CML)

sample type

immortalized cell line

cell line

K562

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/bce258b2-251a-439d-928f-dbd4b250904b/@@download/attachment/Chicago%20ChIP-seq%20Branson%20TruSeq%20Protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

47663409

Reads aligned (%)

92.1

Duplicates removed (%)

28.1

Number of peaks

3295 (qval < 1E-05)

hg19

Number of total reads

47663409

Reads aligned (%)

91.3

Duplicates removed (%)

28.6

Number of peaks

2369 (qval < 1E-05)