Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
IRF1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
adult
donor ID
ENCDO000AAD
age
53 year
sex
female
passage number
4
lab
Kevin White, UChicago
health state
chronic myelogenous leukemia (CML)
sample type
immortalized cell line
cell line
K562

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/bce258b2-251a-439d-928f-dbd4b250904b/@@download/attachment/Chicago%20ChIP-seq%20Branson%20TruSeq%20Protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
31538309
Reads aligned (%)
98.8
Duplicates removed (%)
10.8
Number of peaks
5985 (qval < 1E-05)

hg19

Number of total reads
31538309
Reads aligned (%)
97.9
Duplicates removed (%)
11.1
Number of peaks
5330 (qval < 1E-05)

Base call quality data from DBCLS SRA