Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TSC22D4

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
adult
donor ID
ENCDO000AAD
age
53 year
sex
female
passage number
5
lab
Kevin White, UChicago
health state
chronic myelogenous leukemia (CML)
sample type
immortalized cell line
cell line
K562

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/aeb8ebc0-941e-4393-b2b8-97048f6982d8/@@download/attachment/Chicago%20ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
24641575
Reads aligned (%)
98.0
Duplicates removed (%)
0.7
Number of peaks
1182 (qval < 1E-05)

hg19

Number of total reads
24641575
Reads aligned (%)
97.2
Duplicates removed (%)
0.9
Number of peaks
762 (qval < 1E-05)

Base call quality data from DBCLS SRA