Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SUZ12

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

dev stage
child
donor ID
ENCDO000AAC
age
15 year
sex
male
lab
Michael Snyder, Stanford
health state
hepatocellular carcinoma
sample type
immortalized cell line
cell line
HepG2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/2abad4f0-cd36-43de-8cd8-9958aa7fde39/@@download/attachment/ChIP-Seq_protocol_Snyder_lab_GAIIx.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
25641216
Reads aligned (%)
98.4
Duplicates removed (%)
3.4
Number of peaks
1432 (qval < 1E-05)

hg19

Number of total reads
25641216
Reads aligned (%)
97.5
Duplicates removed (%)
4.5
Number of peaks
1620 (qval < 1E-05)

Base call quality data from DBCLS SRA