Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PKNOX1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

dev stage
adult
donor ID
ENCDO000AAK
age
unknown
sex
female
lab
Michael Snyder, Stanford
health state
unknown
sample type
immortalized cell line
cell line
GM12878

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
36557746
Reads aligned (%)
98.1
Duplicates removed (%)
7.9
Number of peaks
24929 (qval < 1E-05)

hg19

Number of total reads
36557746
Reads aligned (%)
97.3
Duplicates removed (%)
8.0
Number of peaks
25298 (qval < 1E-05)

Base call quality data from DBCLS SRA