Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

dev stage
adult
donor ID
ENCDO000AAD
age
53 year
sex
female
passage number
6
lab
Kevin White, UChicago
health state
chronic myelogenous leukemia (CML)
sample type
immortalized cell line
cell line
K562

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6f37c89c-1622-40eb-ae17-ef9a7c108cd6/@@download/attachment/150730_ChIP-Seq%20protocol_Snyder%20lab_Modified_GFP-tagged_Pico_Bioruptor.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
45792007
Reads aligned (%)
98.4
Duplicates removed (%)
32.2
Number of peaks
24502 (qval < 1E-05)

hg19

Number of total reads
45792007
Reads aligned (%)
97.9
Duplicates removed (%)
32.4
Number of peaks
23949 (qval < 1E-05)

Base call quality data from DBCLS SRA