Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ep300

Cell type

Cell type Class
Lung
Cell type
Lung
MeSH Description
Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Attributes by original data submitter

Sample

dev stage
postnatal
donor ID
ENCDO956IXV
tissue
lung
age
0 day
sex
not collected
lab
Richard Myers, HAIB
sample type
tissue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
32710192
Reads aligned (%)
96.9
Duplicates removed (%)
13.4
Number of peaks
31572 (qval < 1E-05)

mm9

Number of total reads
32710192
Reads aligned (%)
96.8
Duplicates removed (%)
13.5
Number of peaks
31512 (qval < 1E-05)

Base call quality data from DBCLS SRA