Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Hep G2

Primary Tissue

Liver

Tissue Diagnosis

Carcinoma Hepatocellular

Sample

dev stage

child

donor ID

ENCDO000AAC

age

15 year

sex

male

lab

Michael Snyder, Stanford

health state

hepatocellular carcinoma

sample type

immortalized cell line

cell line

HepG2

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/a6e8aca1-c1e5-4ad7-bceb-8ca2e661b909/@@download/attachment/ChIP-Seq%20Biorupter%20Pico%20BravoTruSeq%20protocol%20for%20Syapse.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

79698728

Reads aligned (%)

92.2

Duplicates removed (%)

10.8

Number of peaks

2850 (qval < 1E-05)

hg19

Number of total reads

79698728

Reads aligned (%)

90.8

Duplicates removed (%)

11.0

Number of peaks

1210 (qval < 1E-05)