Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

dev stage
embryonic
donor ID
ENCDO956IXV
tissue
limb
age
14.5 day
sex
pooled male and female
lab
Richard Myers, HAIB
sample type
tissue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
22579230
Reads aligned (%)
96.9
Duplicates removed (%)
9.9
Number of peaks
38183 (qval < 1E-05)

mm9

Number of total reads
22579230
Reads aligned (%)
96.8
Duplicates removed (%)
10.0
Number of peaks
38116 (qval < 1E-05)

Base call quality data from DBCLS SRA