Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

dev stage
postnatal
donor ID
ENCDO956IXV
tissue
kidney
age
0 day
sex
not collected
lab
Richard Myers, HAIB
sample type
tissue

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
24620599
Reads aligned (%)
91.4
Duplicates removed (%)
23.6
Number of peaks
40774 (qval < 1E-05)

mm9

Number of total reads
24620599
Reads aligned (%)
91.2
Duplicates removed (%)
23.7
Number of peaks
40744 (qval < 1E-05)

Base call quality data from DBCLS SRA