Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2R+

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
Input for Mago HA overexpression with Mago knockdown
cell line
S2R+ Cells
chip antibody
none
cell type
Embryonic

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was recovered after reverse crosslinking and phenol chloroform extraction. After precipitating and pelleting, DNA was dissolved in 30 ┬Ál of TE After checking enrichment the recovered DNA was converted into libraries using NebNext Ultra DNA II library preparation kit, following manufacturer's protocol

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
13268284
Reads aligned (%)
97.9
Duplicates removed (%)
9.2
Number of peaks
2980 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA