Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cell line
Cell type
S2R+
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
Input for Mago HA overexpression with Mago knockdown
cell line
S2R+ Cells
chip antibody
none
cell type
Embryonic

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was recovered after reverse crosslinking and phenol chloroform extraction. After precipitating and pelleting, DNA was dissolved in 30 µl of TE After checking enrichment the recovered DNA was converted into libraries using NebNext Ultra DNA II library preparation kit, following manufacturer's protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
13268284
Reads aligned (%)
97.4
Duplicates removed (%)
12.2
Number of peaks
2705 (qval < 1E-05)

dm3

Number of total reads
13268284
Reads aligned (%)
97.9
Duplicates removed (%)
9.2
Number of peaks
2980 (qval < 1E-05)

Base call quality data from DBCLS SRA