Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
MPN progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
MPN progenitor cells
cell type
MPN progenitor cells
genotype
mutant
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq libraries were constructed with the NEBNext ChIP-seq library prep kit following the manufacturer’s recommended protocol (New England Biolabs, Ipswich, MA, USA).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
18453243
Reads aligned (%)
96.3
Duplicates removed (%)
13.1
Number of peaks
446 (qval < 1E-05)

mm9

Number of total reads
18453243
Reads aligned (%)
96.0
Duplicates removed (%)
13.2
Number of peaks
480 (qval < 1E-05)

Base call quality data from DBCLS SRA