Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RELA

Cell type

Cell type Class
Others
Cell type
Detroit 562
Primary Tissue
Nasal Pharynx
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
RELA ChIP-seq Pam2CSK4
cell type
Detroit 562 cells
treatment
Pam2CSK4
batches
6

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
26288009
Reads aligned (%)
141.3
Duplicates removed (%)
27.6
Number of peaks
6361 (qval < 1E-05)

hg38

Number of total reads
26288009
Reads aligned (%)
143.7
Duplicates removed (%)
27.2
Number of peaks
6942 (qval < 1E-05)

Base call quality data from DBCLS SRA