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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Anterior tissues
ATCC
MeSH
RIKEN BRC
SRX2403353
GSM2419237: Input wtE9.5Anterior 10min fix2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Anterior tissues
NA
NA
Attributes by original data submitter
Sample
source_name
Input wtE9.5Anterior 10min fix2
tissue
E9.5 embryo anterior
experiment type
ChIP-seq
antibody
none
treatment
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking 10mins RT, lysis, sonication according to Amin and Bobola (2014). Illumina Truseq DNA library protocol
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
105188232
Reads aligned (%)
96.7
Duplicates removed (%)
20.5
Number of peaks
529 (qval < 1E-05)
mm9
Number of total reads
105188232
Reads aligned (%)
96.4
Duplicates removed (%)
20.4
Number of peaks
644 (qval < 1E-05)
Base call quality data from
DBCLS SRA