Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Larvae
Cell type
Fat Body

Cell type information


MeSH Description
A nutritional reservoir of fatty tissue found mainly in insects and amphibians.

Attributes by Original Data Submitter


source_name
Male OrR late-third wandering larval fat body tissue, input
strain/background
OregonR
genotype/variation
wild-type
Sex
male
tissue
fat body
developmental stage
Late-third wandering larvae
chip antibody
none

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fat body tissue was dounced homogenized and then sonicated using a Bioruptor 300 (Diagenode) prior to ChIP with anti-ORC2 antibody. Libraries were constructed using the NEBNext Ultra II DNA Library Prep Kit for Illumina (Part # E7645S) according to manufacturer's recommendations with indexing primers for multiplexing.

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
7149764
Reads aligned (%)
84.4
Duplicates removed (%)
3.0
Number of peaks
4510 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA