Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cbfb

Cell type

Cell type Class
Blood
Cell type
Thymocytes
MeSH Description
HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Attributes by original data submitter

Sample

source_name
Adult total thymocyte
cell type
Adult total thymocyte
antibody
anti-Cbfb1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to NEB's instructions accompanying the NEBNext ChIP-seq Library prep Kit (E6240). The purified library was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
108102935
Reads aligned (%)
98.0
Duplicates removed (%)
48.8
Number of peaks
35148 (qval < 1E-05)

mm9

Number of total reads
108102935
Reads aligned (%)
97.8
Duplicates removed (%)
48.8
Number of peaks
35220 (qval < 1E-05)

Base call quality data from DBCLS SRA