Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Primed human embryonic stem cells
developmental stage
primed
cell type
embryonic stem cell
growth condition
Activin, FGF
chip antibody
Active Motif anti-H3K4me3, cat 39159

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq as outlined in Hawkins et al., 2013; DNase-HiC similar to Deng et al., 2015

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
12112327
Reads aligned (%)
75.0
Duplicates removed (%)
37.6
Number of peaks
15053 (qval < 1E-05)

hg19

Number of total reads
12112327
Reads aligned (%)
74.5
Duplicates removed (%)
38.5
Number of peaks
15119 (qval < 1E-05)

Base call quality data from DBCLS SRA