Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Pluripotent stem cell

Cell type

ES cells

NA

NA

Sample

source_name

Primed human embryonic stem cells

developmental stage

primed

cell type

embryonic stem cell

growth condition

Activin, FGF

chip antibody

Diagenode anti-H3K4me1, cat C154100037

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP-seq as outlined in Hawkins et al., 2013; DNase-HiC similar to Deng et al., 2015

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

13466280

Reads aligned (%)

94.2

Duplicates removed (%)

2.4

Number of peaks

5656 (qval < 1E-05)

hg19

Number of total reads

13466280

Reads aligned (%)

93.9

Duplicates removed (%)

3.2

Number of peaks

5651 (qval < 1E-05)