Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Naïve human embryonic stem cells
developmental stage
naive
cell type
embryonic stem cell
growth condition
GSKi + MEKi (2i), Lif, IGF1, FGF
chip antibody
n/a

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq as outlined in Hawkins et al., 2013; DNase-HiC similar to Deng et al., 2015

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
20116865
Reads aligned (%)
93.3
Duplicates removed (%)
2.8
Number of peaks
1305 (qval < 1E-05)

hg19

Number of total reads
20116865
Reads aligned (%)
92.4
Duplicates removed (%)
4.7
Number of peaks
1713 (qval < 1E-05)

Base call quality data from DBCLS SRA