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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2383630
GSM2410296: Naïve hESC Input rep2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
Naïve human embryonic stem cells
developmental stage
naive
cell type
embryonic stem cell
growth condition
GSKi + MEKi (2i), Lif, IGF1, FGF
chip antibody
n/a
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq as outlined in Hawkins et al., 2013; DNase-HiC similar to Deng et al., 2015
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
20116865
Reads aligned (%)
93.3
Duplicates removed (%)
2.8
Number of peaks
1305 (qval < 1E-05)
hg19
Number of total reads
20116865
Reads aligned (%)
92.4
Duplicates removed (%)
4.7
Number of peaks
1713 (qval < 1E-05)
Base call quality data from
DBCLS SRA