Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Pre-B ALL
NA
NA

Attributes by original data submitter

Sample

source_name
Ik6 pre-B ALL + TET-Ik1
cell-line
in vitro growing pre-B ALL xenograft-derived cells
genotype/variation
Ik6,BCR-ABL1
induction time
48 hour
antibody
H3K4me3
treatment
IK1

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
21560275
Reads aligned (%)
98.8
Duplicates removed (%)
4.6
Number of peaks
12206 (qval < 1E-05)

hg19

Number of total reads
21560275
Reads aligned (%)
97.8
Duplicates removed (%)
5.9
Number of peaks
12006 (qval < 1E-05)

Base call quality data from DBCLS SRA