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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K18ac
wikigenes
PDBj
CellType: MV-4-11
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2375357
GSM2405919: MV411 H3K18ac; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K18ac
Cell type
Cell type Class
Blood
Cell type
MV-4-11
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous
Attributes by original data submitter
Sample
source_name
MLL-AF4 rearranged acute myeloid leukemia
cell line
MV4;11(Cas9; ENL-FKBP(F36V); ENL-/-)
input
mv411_input
treatment
none
sequencing barcode
GTGCTACC
antibody
H3K18ac
antibody manufacturer
Millipore
antibody catalog number
07-354
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39193096
Reads aligned (%)
97.0
Duplicates removed (%)
27.1
Number of peaks
51097 (qval < 1E-05)
hg19
Number of total reads
39193096
Reads aligned (%)
96.7
Duplicates removed (%)
27.2
Number of peaks
51107 (qval < 1E-05)
Base call quality data from
DBCLS SRA