Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

source_name
whole testis 16dpp
tissue
testis
strain
C57BL/6
age
post natal day 16
Sex
male
genotype
wild type
chip antibody
none, input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
107588653
Reads aligned (%)
56.7
Duplicates removed (%)
33.5
Number of peaks
731 (qval < 1E-05)

mm9

Number of total reads
107588653
Reads aligned (%)
56.6
Duplicates removed (%)
33.5
Number of peaks
833 (qval < 1E-05)

Base call quality data from DBCLS SRA