Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAZ

Cell type

Cell type Class
Digestive tract
Cell type
SW 480
Primary Tissue
unresolved
Tissue Diagnosis
unresolved

Attributes by original data submitter

Sample

source_name
SW480_TIAM1 knockout
cell line
SW480
source tissue
colon
genotype/variation
TIAM1 knockout
chip antibody
TAZ antibody

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
33066340
Reads aligned (%)
154.0
Duplicates removed (%)
18.2
Number of peaks
738 (qval < 1E-05)

hg38

Number of total reads
33066340
Reads aligned (%)
155.3
Duplicates removed (%)
18.0
Number of peaks
772 (qval < 1E-05)

Base call quality data from DBCLS SRA