SRX237288
GSM1082932: γ-H2AX IL2aCD3aCD28 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells activated by IL-2+aCD3+aCD28
cell type
CD4+ T cells
chip antibody
gamma H2A.X (Abcam, ab2893, lot GR43146-1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
169035422
Reads aligned (%)
97.4
Duplicates removed (%)
54.2
Number of peaks
3716 (qval < 1E-05)

hg19

Number of total reads
169035422
Reads aligned (%)
96.3
Duplicates removed (%)
56.1
Number of peaks
2735 (qval < 1E-05)

Base call quality data from DBCLS SRA