SRX237285
GSM1082929: H2AX IL2aCD3aCD28 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.X

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells activated by IL-2+aCD3+aCD28
cell type
CD4+ T cells
chip antibody
H2A.X (Abcam, ab11175, lot GR4642-5)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
184504233
Reads aligned (%)
97.1
Duplicates removed (%)
61.5
Number of peaks
3855 (qval < 1E-05)

hg19

Number of total reads
184504233
Reads aligned (%)
96.1
Duplicates removed (%)
63.3
Number of peaks
2898 (qval < 1E-05)

Base call quality data from DBCLS SRA