Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
A172
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

age
53 year
donor ID
ENCDO934VEN
dev stage
adult
sample type
immortalized cell line
sex
male
cell line
A172
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
76759511
Reads aligned (%)
82.6
Duplicates removed (%)
41.3
Number of peaks
64177 (qval < 1E-05)

hg19

Number of total reads
76759511
Reads aligned (%)
82.0
Duplicates removed (%)
41.7
Number of peaks
63507 (qval < 1E-05)

Base call quality data from DBCLS SRA