SRX2370792
GSM2400491: DNase-seq from embryonic facial prominence (ENCLB092SZP); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Embryonic facial prominences
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
male
sample type
tissue
donor ID
ENCDO567MNP
age
81 day
lab
John Stamatoyannopoulos, UW
tissue
embryonic facial prominence

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
186567964
Reads aligned (%)
64.4
Duplicates removed (%)
51.2
Number of peaks
14304 (qval < 1E-05)

hg19

Number of total reads
186567964
Reads aligned (%)
63.9
Duplicates removed (%)
51.7
Number of peaks
13105 (qval < 1E-05)

Base call quality data from DBCLS SRA