Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

dev stage
unknown
cell type
acute myeloid leukemia
sex
not collected
sample type
in vitro differentiated cells
donor ID
ENCDO072AAA
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17061248
Reads aligned (%)
84.1
Duplicates removed (%)
4.3
Number of peaks
17298 (qval < 1E-05)

mm9

Number of total reads
17061248
Reads aligned (%)
84.0
Duplicates removed (%)
4.6
Number of peaks
17257 (qval < 1E-05)

Base call quality data from DBCLS SRA