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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Acute myeloid leukemia
ATCC
MeSH
RIKEN BRC
SRX2370786
GSM2400485: DNase-seq from acute myeloid leukemia (ENCLB151XSF); Mus musculus; DNase-Hypersensitivity
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA
Attributes by original data submitter
Sample
dev stage
unknown
cell type
acute myeloid leukemia
sex
not collected
sample type
in vitro differentiated cells
donor ID
ENCDO072AAA
age
unknown
lab
John Stamatoyannopoulos, UW
Sequenced DNA Library
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
17061248
Reads aligned (%)
84.1
Duplicates removed (%)
4.3
Number of peaks
17298 (qval < 1E-05)
mm9
Number of total reads
17061248
Reads aligned (%)
84.0
Duplicates removed (%)
4.6
Number of peaks
17257 (qval < 1E-05)
Base call quality data from
DBCLS SRA