Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Glomerular visceral epithelial cells
NA
NA

Attributes by original data submitter

Sample

dev stage
child
cell type
glomerular visceral epithelial cell
sex
not collected
sample type
primary cell
donor ID
ENCDO879VOF
age
3 year
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
46784542
Reads aligned (%)
81.8
Duplicates removed (%)
3.2
Number of peaks
38808 (qval < 1E-05)

hg19

Number of total reads
46784542
Reads aligned (%)
81.2
Duplicates removed (%)
3.6
Number of peaks
38682 (qval < 1E-05)

Base call quality data from DBCLS SRA