Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Neural
Cell type
Globus Pallidus
MeSH Description
The representation of the phylogenetically oldest part of the corpus striatum called the paleostriatum. It forms the smaller, more medial part of the lentiform nucleus.

Attributes by original data submitter

Sample

dev stage
adult
sex
male
sample type
tissue
donor ID
ENCDO240JUB
age
84 year
lab
John Stamatoyannopoulos, UW
tissue
globus pallidus

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
81298418
Reads aligned (%)
8.3
Duplicates removed (%)
18.3
Number of peaks
8202 (qval < 1E-05)

hg19

Number of total reads
81298418
Reads aligned (%)
8.2
Duplicates removed (%)
19.0
Number of peaks
8115 (qval < 1E-05)

Base call quality data from DBCLS SRA