SRX2370760
GSM2400460: DNase-seq from eye (ENCLB361ZWP); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Eyes
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
not collected
sample type
tissue
donor ID
ENCDO708OLI
age
56 day
lab
John Stamatoyannopoulos, UW
tissue
eye

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
493632577
Reads aligned (%)
7.0
Duplicates removed (%)
11.5
Number of peaks
54068 (qval < 1E-05)

hg19

Number of total reads
493632577
Reads aligned (%)
6.9
Duplicates removed (%)
12.6
Number of peaks
53987 (qval < 1E-05)

Base call quality data from DBCLS SRA