Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Others

Cell type

Eyes

NA

NA

Sample

dev stage

fetal

sex

male

sample type

tissue

donor ID

ENCDO647EYG

age

76 day

lab

John Stamatoyannopoulos, UW

tissue

eye

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

292713827

Reads aligned (%)

80.8

Duplicates removed (%)

11.6

Number of peaks

158349 (qval < 1E-05)

hg19

Number of total reads

292713827

Reads aligned (%)

80.4

Duplicates removed (%)

12.4

Number of peaks

156852 (qval < 1E-05)