SRX2370758
GSM2400456: DNase-seq from right kidney (ENCLB500XLJ); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Kidney
Cell type
Fetal kidney
NA
NA

Attributes by original data submitter

Sample

dev stage
fetal
sex
male
sample type
tissue
donor ID
ENCDO245RIZ
age
91 day
lab
John Stamatoyannopoulos, UW
tissue
right kidney

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
126225835
Reads aligned (%)
3.0
Duplicates removed (%)
3.7
Number of peaks
8124 (qval < 1E-05)

hg19

Number of total reads
126225835
Reads aligned (%)
3.0
Duplicates removed (%)
4.0
Number of peaks
8164 (qval < 1E-05)

Base call quality data from DBCLS SRA