Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Tongue
MeSH Description
A muscular organ in the mouth that is covered with pink tissue called mucosa, tiny bumps called papillae, and thousands of taste buds. The tongue is anchored to the mouth and is vital for chewing, swallowing, and for speech.

Attributes by original data submitter

Sample

dev stage
fetal
sex
female
sample type
tissue
donor ID
ENCDO294EUZ
age
59 day
lab
John Stamatoyannopoulos, UW
tissue
tongue

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
47860430
Reads aligned (%)
70.1
Duplicates removed (%)
2.8
Number of peaks
34038 (qval < 1E-05)

hg19

Number of total reads
47860430
Reads aligned (%)
69.7
Duplicates removed (%)
3.0
Number of peaks
33978 (qval < 1E-05)

Base call quality data from DBCLS SRA