SRX2370753
GSM2400449: DNase-seq from L1-S8R (ENCLB280SCP); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
L1-S8R
NA
NA

Attributes by original data submitter

Sample

dev stage
unknown
cell line
L1-S8R
sex
not collected
sample type
induced pluripotent stem cell line
donor ID
ENCDO430ZDZ
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
275002281
Reads aligned (%)
84.1
Duplicates removed (%)
7.6
Number of peaks
117318 (qval < 1E-05)

hg19

Number of total reads
275002281
Reads aligned (%)
83.4
Duplicates removed (%)
8.8
Number of peaks
115111 (qval < 1E-05)

Base call quality data from DBCLS SRA