Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
NAMALWA
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

dev stage
child
cell line
NAMALWA
sex
female
sample type
immortalized cell line
donor ID
ENCDO993XLR
age
3 year
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
213369272
Reads aligned (%)
3.4
Duplicates removed (%)
6.8
Number of peaks
11297 (qval < 1E-05)

hg19

Number of total reads
213369272
Reads aligned (%)
3.4
Duplicates removed (%)
7.9
Number of peaks
11535 (qval < 1E-05)

Base call quality data from DBCLS SRA