SRX2370717
GSM2400409: DNase-seq from RPMI8226 (ENCLB123CIH); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
RPMI 8226
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

dev stage
adult
cell line
RPMI8226
sex
male
sample type
immortalized cell line
donor ID
ENCDO624OGB
age
61 year
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
290268995
Reads aligned (%)
80.1
Duplicates removed (%)
59.9
Number of peaks
116919 (qval < 1E-05)

hg19

Number of total reads
290268995
Reads aligned (%)
79.7
Duplicates removed (%)
60.7
Number of peaks
118649 (qval < 1E-05)

Base call quality data from DBCLS SRA