SRX2370712
GSM2400413: DNase-seq from HAP-1 (ENCLB949CJA); Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
HAP1
NA
NA

Attributes by original data submitter

Sample

dev stage
unknown
cell line
HAP-1
sex
male
sample type
immortalized cell line
donor ID
ENCDO188XMG
age
unknown
lab
John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
233880361
Reads aligned (%)
53.5
Duplicates removed (%)
46.3
Number of peaks
70978 (qval < 1E-05)

hg19

Number of total reads
233880361
Reads aligned (%)
53.1
Duplicates removed (%)
35.9
Number of peaks
60532 (qval < 1E-05)

Base call quality data from DBCLS SRA