Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Colon, Sigmoid
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX2370708
GSM2400405: DNase-seq from sigmoid colon (ENCLB369VGO); Homo sapiens; DNase-Hypersensitivity
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Digestive tract
Cell type
Colon, Sigmoid
MeSH Description
A segment of the COLON between the RECTUM and the descending colon.
Attributes by original data submitter
Sample
dev stage
adult
sex
male
sample type
tissue
donor ID
ENCDO845WKR
age
37 year
lab
John Stamatoyannopoulos, UW
tissue
sigmoid colon
Sequenced DNA Library
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
245039670
Reads aligned (%)
58.7
Duplicates removed (%)
54.6
Number of peaks
6786 (qval < 1E-05)
hg19
Number of total reads
245039670
Reads aligned (%)
58.2
Duplicates removed (%)
55.3
Number of peaks
5082 (qval < 1E-05)
Base call quality data from
DBCLS SRA