Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Placenta
Cell type
Placenta
MeSH Description
A highly vascularized mammalian fetal-maternal organ and major site of transport of oxygen, nutrients, and fetal waste products. It includes a fetal portion (CHORIONIC VILLI) derived from TROPHOBLASTS and a maternal portion (DECIDUA) derived from the uterine ENDOMETRIUM. The placenta produces an array of steroid, protein and peptide hormones (PLACENTAL HORMONES).

Attributes by original data submitter

Sample

dev stage
fetal
sex
female
sample type
tissue
donor ID
ENCDO060OTP
age
101 day
lab
John Stamatoyannopoulos, UW
tissue
placenta

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
180313385
Reads aligned (%)
59.8
Duplicates removed (%)
14.1
Number of peaks
85751 (qval < 1E-05)

hg19

Number of total reads
180313385
Reads aligned (%)
59.4
Duplicates removed (%)
14.5
Number of peaks
84955 (qval < 1E-05)

Base call quality data from DBCLS SRA